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Nanotech 2002 Vol. 2
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Technical Proceedings of the 2002 International Conference on Computational Nanoscience and Nanotechnology
Nanotech 2002 Vol. 2
Technical Proceedings of the 2002 International Conference on Computational Nanoscience and Nanotechnology
 
Chapter 6: Micro and Nano Fluidic Systems
 

Macromolecules in Microdevices: Multiscale simulation of DNA dynamics in model microfluidic geometries

Authors:R.M. Jendrejack, J.J. de Pablo and M.D. Graham
Affilation:University of Wisconsin-Madison, USA
Pages:111 - 114
Keywords:DNA, microfluidic, hydrodynamic, interactions, Brownian dynamics, polymer solutions
Abstract:Simple arguments predict that the dynamics of a dissolved macromolecule confined to a channel comparable to its equilibrium coi size (~1 um for viral DNA) are quite different from those in free solution, because of the no-slip boundary condition on the fluid motion. Nevertheless, detailed, predictive computations have not been previously performed. We have incorporated a Brownian dynamics model of DNA into a fully self-consistent computational scheme that simultaneously resolves the macromolecular and fluid (i.e. solvent) dynamics of DNA in a microfluidics channel. The key novel feature of this scheme is the numerical computation of the Green's function for the flow problem, enabling a stochastic solution method that incorporates detailed hydrodynamics and respects the fluctuation-dissipation theorem. With this methodology we study a number of important confinement effects, focusing here on the retardation of relaxation of a chain in small channel.
Macromolecules in Microdevices: Multiscale simulation of DNA dynamics in model microfluidic geometriesView paper
ISBN:0-9708275-6-3
Pages:504
Hardcopy:$100.00
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